{"id":1166,"date":"2018-06-08T15:10:01","date_gmt":"2018-06-08T19:10:01","guid":{"rendered":"http:\/\/mlmed.org\/w\/?p=1166"},"modified":"2020-07-18T15:37:13","modified_gmt":"2020-07-18T19:37:13","slug":"gene-graph-convolutions","status":"publish","type":"post","link":"https:\/\/mlmed.org\/w\/gene-graph-convolutions\/","title":{"rendered":"Gene Graph Convolutions"},"content":{"rendered":"<p>We discuss how gene-gene interaction graphs (same pathway, protein-protein, co-expression, or research paper text association) can be used to impose a bias on a deep neural network model similar to the spatial bias imposed by convolutions on an image. We find this approach provides an advantage for particular tasks in a low data regime but is very dependent on the quality of the graph used.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>We discuss how gene-gene interaction graphs (same pathway, protein-protein, co-expression, or research paper text association) can be used to impose a bias on a deep neural network model similar to the spatial bias imposed by convolutions on an image. We find this approach provides an advantage for particular tasks in a low data regime but [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":1202,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":[],"categories":[18,17],"tags":[],"acf":[],"_links":{"self":[{"href":"https:\/\/mlmed.org\/w\/wp-json\/wp\/v2\/posts\/1166"}],"collection":[{"href":"https:\/\/mlmed.org\/w\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/mlmed.org\/w\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/mlmed.org\/w\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/mlmed.org\/w\/wp-json\/wp\/v2\/comments?post=1166"}],"version-history":[{"count":9,"href":"https:\/\/mlmed.org\/w\/wp-json\/wp\/v2\/posts\/1166\/revisions"}],"predecessor-version":[{"id":1437,"href":"https:\/\/mlmed.org\/w\/wp-json\/wp\/v2\/posts\/1166\/revisions\/1437"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/mlmed.org\/w\/wp-json\/wp\/v2\/media\/1202"}],"wp:attachment":[{"href":"https:\/\/mlmed.org\/w\/wp-json\/wp\/v2\/media?parent=1166"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/mlmed.org\/w\/wp-json\/wp\/v2\/categories?post=1166"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/mlmed.org\/w\/wp-json\/wp\/v2\/tags?post=1166"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}